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Employer: Contamination Source Identification, LLC

 

Job Location: Huntingdon, PA

 

Job Title:  Director of LIMS and Bioinformatics Pipeline Development

 

Job Duties: 

 

Execute and interpret multiomic analyses including16S rRNA, Shotgun metagenomic, metatranscriptomic, RNA-seq, and whole genome sequencing (10%); lead strategic planning and implementation of Laboratory Information Management Systems (LIMS) to streamline data management and ensure compliance with industry standards in both a cloud and on-premises computing environment (15%); Deploy, maintain, and troubleshoot the Laboratory Information Management System (LIMS) platform (including L7|ESP) and containerized code in a docker environment (5%); oversee development and optimization of data analysis pipelines, driving innovation in microbial genomics research through integration of cutting-edge technologies (20%); manage bioinformatics projects and personnel (10%); troubleshoot and maintain high-performance computing servers and hardware (5%); apply GitHub project and code-based management (5%); collaborate with cross-functional teams, playing a pivotal role in enhancing operational efficiency, data accuracy, and overall success of genomics projects (20%); perform coding and bioinformatics software development using Python, R, JavaScript (Groovy), Pandas, and Nextflow (5%); working in a cloud and on-premises computing environment (5%).

 

Hybrid work permitted at employer’s discretion.

 

Requirements:

 

Master’s degree in Biology, Bioinformatics, Chemistry, Statistics, or related field and 3 years of experience as a bioinformatician, computational scientist, or any occupation in biostatistics or bioinformatics, or a Bachelor’s degree in Biology, Bioinformatics, Chemistry, Statistics, or related field and 5 years of experience as a bioinformatician, computational scientist, or any occupation in biostatistics or bioinformatics

 

*Specific skills and other requirements: 

Must possess 5 years with a Bachelor’s degree or 3 years with a Master’s degree in the following:

 

  • Working in a cloud and on-premises computing environment;

  • Maintaining and troubleshooting high-performance computing servers and hardware;

  • Deploying, maintaining, and troubleshooting of a Laboratory Information Management System (LIMS) platform (including L7|ESP) and containerized code in a docker environment;

  • Executing and interpreting multiomic analyses including16S rRNA, Shotgun metagenomic, metatranscriptomic, RNA-seq, and whole genome sequencing;

  • Project management and personnel management;

  • GitHub project and code-based management;

  • Coding and bioinformatics software development in the following: Python, R, JavaScript (Groovy), Pandas, and Nextflow.

 

 

The position is located at 419 14th Street, Huntingdon, PA 16652

 

Hybrid work permitted at employer’s discretion.

Submit Resume to Justin Wright at justinwright@csidx.com